IL_7Q4K_135

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

7Q4K|1|BA|A|1981

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_135 not in the Motif Atlas

Homologous match to IL_4WF9_068

Geometric discrepancy: 0.1045

The information below is about IL_4WF9_068

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

7Q4K|1|BA|G|1770
7Q4K|1|BA|C|1771
*
7Q4K|1|BA|G|1980
7Q4K|1|BA|A|1981
7Q4K|1|BA|U|1982

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BC

50S ribosomal protein L2