IL_7Q4K_162

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_162 not in the Motif Atlas

Homologous match to IL_5J7L_338

Geometric discrepancy: 0.096

The information below is about IL_5J7L_338

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7Q4K|1|BA|C|2466
7Q4K|1|BA|C|2467
7Q4K|1|BA|A|2468
7Q4K|1|BA|A|2469
7Q4K|1|BA|G|2470
*
7Q4K|1|BA|C|2480
7Q4K|1|BA|G|2481
7Q4K|1|BA|A|2482
7Q4K|1|BA|C|2483
7Q4K|1|BA|G|2484

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B4

50S ribosomal protein L36

Chain BM

50S ribosomal protein L16