IL_7Q4K_190

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

7Q4K|1|AA|A|1492, 7Q4K|1|AA|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_190 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.2988

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7Q4K|1|AA|5MC|1407
7Q4K|1|AA|A|1408
7Q4K|1|AA|C|1409
*
7Q4K|1|AA|G|1491
7Q4K|1|AA|A|1492
7Q4K|1|AA|A|1493
7Q4K|1|AA|G|1494

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain BA

Large subunit ribosomal RNA; LSU rRNA

Chain D4

MsrDL mRNA