IL_7Q4K_192

3D structure

PDB id

7Q4K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7Q4K_192 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.0652

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

7Q4K|1|BA|G|1666
7Q4K|1|BA|G|1667
7Q4K|1|BA|A|1668
7Q4K|1|BA|A|1669
7Q4K|1|BA|C|1670
7Q4K|1|BA|U|1671
7Q4K|1|BA|A|1672
7Q4K|1|BA|G|1673
7Q4K|1|BA|G|1674
*
7Q4K|1|BA|C|1990
7Q4K|1|BA|U|1991
7Q4K|1|BA|G|1992
7Q4K|1|BA|U|1993
7Q4K|1|BA|C|1994

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BK

50S ribosomal protein L14