IL_7QGN_057

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGN_057 not in the Motif Atlas

Geometric match to IL_5J7L_057

Geometric discrepancy: 0.0919

The information below is about IL_5J7L_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

7QGN|1|0|C|1303
7QGN|1|0|G|1304
7QGN|1|0|G|1305
7QGN|1|0|A|1306
7QGN|1|0|U|1307
7QGN|1|0|U|1308
*
7QGN|1|0|A|1329
7QGN|1|0|U|1330
7QGN|1|0|G|1331
7QGN|1|0|A|1332
7QGN|1|0|A|1333
7QGN|1|0|G|1334

Current chains

Chain 0

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S13