IL_7QGN_077

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

7QGN|1|N|A|504, 7QGN|1|N|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGN_077 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.0788

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

7QGN|1|N|G|481
7QGN|1|N|A|482
7QGN|1|N|A|483
7QGN|1|N|C|484
*
7QGN|1|N|G|496
7QGN|1|N|A|497
7QGN|1|N|G|498
7QGN|1|N|U|499
7QGN|1|N|G|500
7QGN|1|N|A|501
7QGN|1|N|A|502
7QGN|1|N|A|503
7QGN|1|N|A|504
7QGN|1|N|A|505
7QGN|1|N|G|506
7QGN|1|N|A|507
7QGN|1|N|A|508
7QGN|1|N|C|509

Current chains

Chain N

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L22

Chain h

50S ribosomal protein L24