IL_7QGN_101

3D structure

PDB id

7QGN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SmrB-bound E. coli disome - stalled 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.37 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7QGN|1|N|A|1143

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QGN_101 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.1478

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

7QGN|1|N|U|1018
7QGN|1|N|U|1019
7QGN|1|N|A|1020
7QGN|1|N|A|1021
7QGN|1|N|G|1022
7QGN|1|N|U|1023
7QGN|1|N|G|1024
*
7QGN|1|N|C|1140
7QGN|1|N|U|1141
7QGN|1|N|A|1142
7QGN|1|N|A|1143
7QGN|1|N|A|1144

Current chains

Chain N

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L13

Chain r

50S ribosomal protein L36