IL_7QI4_030

3D structure

PDB id

7QI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome at 2.2 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

7QI4|1|A|C|2549

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QI4_030 not in the Motif Atlas

Geometric match to IL_5TBW_084

Geometric discrepancy: 0.0901

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

7QI4|1|A|C|2548
7QI4|1|A|C|2549
7QI4|1|A|A|2550
7QI4|1|A|G|2551
*
7QI4|1|A|C|2566
7QI4|1|A|G|2567

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain D

39S ribosomal protein L2, mitochondrial