IL_7QI4_043

3D structure

PDB id

7QI4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome at 2.2 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QI4_043 not in the Motif Atlas

Geometric match to IL_4V9F_082

Geometric discrepancy: 0.0793

The information below is about IL_4V9F_082

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

7QI4|1|A|G|2941
7QI4|1|A|C|2942
*
7QI4|1|A|G|2983
7QI4|1|A|A|2984
7QI4|1|A|C|2985

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain W

39S ribosomal protein L27, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial