IL_7QI6_100

3D structure

PDB id

7QI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with mRNA, A/P- and P/E-tRNAs at 2.98 A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

2.98 Å

Loop

Sequence

AAU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AAU,AUU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QI6_100 not in the Motif Atlas

Geometric match to IL_5Y7M_007

Geometric discrepancy: 0.1737

The information below is about IL_5Y7M_007

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

7QI6|1|Aw|A|27
7QI6|1|Aw|A|28
7QI6|1|Aw|U|29
*
7QI6|1|Aw|A|41
7QI6|1|Aw|U|42
7QI6|1|Aw|U|43

Current chains

Chain Aw

A/P-tRNA

Nearby chains

Chain 8

39S ribosomal protein L40, mitochondrial

Chain AA

Small subunit ribosomal RNA; SSU rRNA