IL_7QP7_077

3D structure

PDB id

7QP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in closed state (h48S AUG closed)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

7QP7|1|A|C|1434

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP7_077 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1838

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

7QP7|1|A|U|1408
7QP7|1|A|A|1409
*
7QP7|1|A|U|1432
7QP7|1|A|C|1433
7QP7|1|A|C|1434
7QP7|1|A|C|1435
7QP7|1|A|C|1436
7QP7|1|A|C|1437
7QP7|1|A|A|1438

Current chains

Chain A

18S rRNA

Nearby chains

Chain Y

40S ribosomal protein S16

Chain h

40S ribosomal protein S20