IL_7QP7_094

3D structure

PDB id

7QP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 48S initiation complex in closed state (h48S AUG closed)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

(OMU)CC(PSU)U(OMU)*AUUCG

Length

11 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QP7_094 not in the Motif Atlas

Homologous match to IL_8P9A_382

Geometric discrepancy: 0.2232

The information below is about IL_8P9A_382

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31545.1

Basepair signature

cWW-L-R-L-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7QP7|1|A|OMU|116
7QP7|1|A|C|117
7QP7|1|A|C|118
7QP7|1|A|PSU|119
7QP7|1|A|U|120
7QP7|1|A|OMU|121
*
7QP7|1|A|A|343
7QP7|1|A|U|344
7QP7|1|A|U|345
7QP7|1|A|C|346
7QP7|1|A|G|347

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S4, X isoform

Chain R

40S ribosomal protein S8