3D structure

PDB id
7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GCAAG*CAACC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7QQ3_030 not in the Motif Atlas
Homologous match to IL_5J7L_274
Geometric discrepancy: 0.1613
The information below is about IL_5J7L_274
Detailed Annotation
Double sheared with non-canonical cWW
Broad Annotation
Double sheared
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

7QQ3|1|I|G|875
7QQ3|1|I|C|876
7QQ3|1|I|A|877
7QQ3|1|I|A|878
7QQ3|1|I|G|879
*
7QQ3|1|I|C|898
7QQ3|1|I|A|899
7QQ3|1|I|A|900
7QQ3|1|I|C|901
7QQ3|1|I|C|902

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain U
50S ribosomal protein L16

Coloring options:


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