IL_7QQ3_036

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

7QQ3|1|I|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QQ3_036 not in the Motif Atlas

Homologous match to IL_7RQB_039

Geometric discrepancy: 0.0571

The information below is about IL_7RQB_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57188.3

Basepair signature

cWW-cSH-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

7QQ3|1|I|U|1018
7QQ3|1|I|U|1019
7QQ3|1|I|A|1020
7QQ3|1|I|A|1021
7QQ3|1|I|G|1022
7QQ3|1|I|U|1023
7QQ3|1|I|G|1024
*
7QQ3|1|I|C|1140
7QQ3|1|I|U|1141
7QQ3|1|I|A|1142
7QQ3|1|I|A|1143
7QQ3|1|I|A|1144

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain R

50S ribosomal protein L13

Chain m

50S ribosomal protein L36