3D structure

PDB id
7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUAACGGGGC
Length
24 nucleotides
Bulged bases
7QQ3|1|I|A|1127, 7QQ3|1|I|U|1130
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7QQ3_037 not in the Motif Atlas
Geometric match to IL_5J7L_281
Geometric discrepancy: 0.0594
The information below is about IL_5J7L_281
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

7QQ3|1|I|G|1024
7QQ3|1|I|G|1025
7QQ3|1|I|G|1026
7QQ3|1|I|A|1027
7QQ3|1|I|A|1028
7QQ3|1|I|A|1029
7QQ3|1|I|C|1030
*
7QQ3|1|I|G|1124
7QQ3|1|I|G|1125
7QQ3|1|I|A|1126
7QQ3|1|I|A|1127
7QQ3|1|I|G|1128
7QQ3|1|I|A|1129
7QQ3|1|I|U|1130
7QQ3|1|I|G|1131
7QQ3|1|I|U|1132
7QQ3|1|I|A|1133
7QQ3|1|I|A|1134
7QQ3|1|I|C|1135
7QQ3|1|I|G|1136
7QQ3|1|I|G|1137
7QQ3|1|I|G|1138
7QQ3|1|I|G|1139
7QQ3|1|I|C|1140

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L3
Chain R
50S ribosomal protein L13
Chain U
50S ribosomal protein L16
Chain m
50S ribosomal protein L36

Coloring options:


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