IL_7QQ3_042

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GAAA*UC

Length

6 nucleotides

Bulged bases

7QQ3|1|I|A|1088

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QQ3_042 not in the Motif Atlas

Homologous match to IL_6PRV_002

Geometric discrepancy: 0.22

The information below is about IL_6PRV_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7QQ3|1|I|G|1087
7QQ3|1|I|A|1088
7QQ3|1|I|A|1089
7QQ3|1|I|A|1090
*
7QQ3|1|I|U|1101
7QQ3|1|I|C|1102

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain m

50S ribosomal protein L36