3D structure

PDB id
7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
AUAAGUAA*UGAAAUU
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7QQ3_046 not in the Motif Atlas
Homologous match to IL_5J7L_289
Geometric discrepancy: 0.0517
The information below is about IL_5J7L_289
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

7QQ3|1|I|A|1262
7QQ3|1|I|U|1263
7QQ3|1|I|A|1264
7QQ3|1|I|A|1265
7QQ3|1|I|G|1266
7QQ3|1|I|U|1267
7QQ3|1|I|A|1268
7QQ3|1|I|A|1269
*
7QQ3|1|I|U|2011
7QQ3|1|I|G|2012
7QQ3|1|I|A|2013
7QQ3|1|I|A|2014
7QQ3|1|I|A|2015
7QQ3|1|I|U|2016
7QQ3|1|I|U|2017

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain B
Myxovalargin A
Chain M
50S ribosomal protein L4
Chain a
50S ribosomal protein L22
Chain i
50S ribosomal protein L32

Coloring options:


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