3D structure

PDB id
7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7QQ3_063 not in the Motif Atlas
Geometric match to IL_5J7L_306
Geometric discrepancy: 0.0516
The information below is about IL_5J7L_306
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.7
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

7QQ3|1|I|G|1666
7QQ3|1|I|G|1667
7QQ3|1|I|A|1668
7QQ3|1|I|A|1669
*
7QQ3|1|I|U|1993
7QQ3|1|I|C|1994

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L3
Chain S
50S ribosomal protein L14

Coloring options:


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