IL_7QQ3_075

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CGAAA(5MU)UCCUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

7QQ3|1|I|A|1938, 7QQ3|1|I|U|1944

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QQ3_075 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1176

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

7QQ3|1|I|C|1934
7QQ3|1|I|G|1935
7QQ3|1|I|A|1936
7QQ3|1|I|A|1937
7QQ3|1|I|A|1938
7QQ3|1|I|5MU|1939
7QQ3|1|I|U|1940
7QQ3|1|I|C|1941
7QQ3|1|I|C|1942
7QQ3|1|I|U|1943
7QQ3|1|I|U|1944
7QQ3|1|I|G|1945
*
7QQ3|1|I|C|1961
7QQ3|1|I|5MC|1962
7QQ3|1|I|U|1963
7QQ3|1|I|G|1964

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2