3D structure

PDB id
7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.1 Å

Loop

Sequence
GUG*CC
Length
5 nucleotides
Bulged bases
7QQ3|1|I|U|2068
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7QQ3_079 not in the Motif Atlas
Homologous match to IL_4WF9_080
Geometric discrepancy: 0.0774
The information below is about IL_4WF9_080
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

7QQ3|1|I|G|2067
7QQ3|1|I|U|2068
7QQ3|1|I|G|2069
*
7QQ3|1|I|C|2442
7QQ3|1|I|C|2443

Current chains

Chain I
23S ribosomal RNA

Nearby chains

Chain M
50S ribosomal protein L4
Chain T
50S ribosomal protein L15

Coloring options:


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