IL_7QQ3_092

3D structure

PDB id

7QQ3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 50S ribosomal subunit in complex with the antibiotic Myxovalargin A.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UUC*GG

Length

5 nucleotides

Bulged bases

7QQ3|1|I|U|2402

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QQ3_092 not in the Motif Atlas

Geometric match to IL_5LYS_008

Geometric discrepancy: 0.3675

The information below is about IL_5LYS_008

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

7QQ3|1|I|U|2401
7QQ3|1|I|U|2402
7QQ3|1|I|C|2403
*
7QQ3|1|I|G|2414
7QQ3|1|I|G|2415

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain j

50S ribosomal protein L33

Chain l

50S ribosomal protein L35