IL_7QQX_004

3D structure

PDB id

7QQX (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpCas9 bound to FANCF off-target5 DNA substrate

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUU*ATG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

7QQX|1|A|C|8
7QQX|1|A|U|9
7QQX|1|A|U|10
*
7QQX|1|C|DA|11
7QQX|1|C|DT|12
7QQX|1|C|DG|13

Current chains

Chain A

FANCF sgRNA

Chain C

FANCF off-target5 target strand

Nearby chains

Chain B

CRISPR-associated endonuclease Cas9/Csn1