IL_7QR0_002

3D structure

PDB id

7QR0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpCas9 bound to TRAC off-target1 DNA substrate

Experimental method

X-RAY DIFFRACTION

Resolution

2.3 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

7QR0|1|A|U|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

7QR0|1|A|G|54
7QR0|1|A|C|55
*
7QR0|1|A|G|58
7QR0|1|A|U|59
7QR0|1|A|C|60

Current chains

Chain A

TRAC sgRNA

Nearby chains

Chain B

CRISPR-associated endonuclease Cas9/Csn1