IL_7QR4_002

3D structure

PDB id

7QR4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human CPEB3 HDV-like ribozyme

Experimental method

X-RAY DIFFRACTION

Resolution

2.83 Å

Loop

Sequence

CCACAGCAGAAG*CAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QR4_002 not in the Motif Atlas

Geometric match to IL_7QR4_001

Geometric discrepancy: 0.0001

The information below is about IL_7QR4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84665.1

Basepair signature

cWW-L-cSW-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

7QR4|1|B|C|6||||4_555
7QR4|1|B|C|7||||4_555
7QR4|1|B|A|8||||4_555
7QR4|1|B|C|9||||4_555
7QR4|1|B|A|10||||4_555
7QR4|1|B|G|11||||4_555
7QR4|1|B|C|12||||4_555
7QR4|1|B|A|13||||4_555
7QR4|1|B|G|14||||4_555
7QR4|1|B|A|15||||4_555
7QR4|1|B|A|16||||4_555
7QR4|1|B|G|17||||4_555
*
7QR4|1|B|C|29||||4_555
7QR4|1|B|A|30||||4_555
7QR4|1|B|G|31||||4_555

Current chains

Chain B

RNA CPEB3 ribozyme

Nearby chains