IL_7QV1_014

3D structure

PDB id

7QV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis collided disome (Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QV1_014 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.1291

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

7QV1|1|V|C|241
7QV1|1|V|U|242
7QV1|1|V|G|243
7QV1|1|V|A|244
7QV1|1|V|G|245
7QV1|1|V|U|246
7QV1|1|V|A|247
7QV1|1|V|G|248
*
7QV1|1|V|C|256
7QV1|1|V|G|257
7QV1|1|V|A|258
7QV1|1|V|A|259
7QV1|1|V|A|260
7QV1|1|V|C|261
7QV1|1|V|G|262

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15