IL_7QV1_053

3D structure

PDB id

7QV1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis collided disome (Leading 70S)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUGAGUAG*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7QV1_053 not in the Motif Atlas

Homologous match to IL_7RQB_049

Geometric discrepancy: 0.1395

The information below is about IL_7RQB_049

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.7

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

7QV1|1|V|A|1302
7QV1|1|V|U|1303
7QV1|1|V|G|1304
7QV1|1|V|A|1305
7QV1|1|V|G|1306
7QV1|1|V|U|1307
7QV1|1|V|A|1308
7QV1|1|V|G|1309
*
7QV1|1|V|U|2040
7QV1|1|V|G|2041
7QV1|1|V|A|2042
7QV1|1|V|A|2043
7QV1|1|V|A|2044
7QV1|1|V|U|2045
7QV1|1|V|U|2046

Current chains

Chain V

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain E

50S ribosomal protein L4

Chain S

50S ribosomal protein L22