IL_7R4X_031

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GAG*CGAGG(A2M)UC

Length

11 nucleotides

Bulged bases

7R4X|1|2|G|588

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R4X_031 not in the Motif Atlas

Homologous match to IL_8C3A_420

Geometric discrepancy: 0.1179

The information below is about IL_8C3A_420

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14882.1

Basepair signature

cWW-tSH-L-cWW-L-L-R-L

Number of instances in this motif group

1

Unit IDs

7R4X|1|2|G|563
7R4X|1|2|A|564
7R4X|1|2|G|565
*
7R4X|1|2|C|585
7R4X|1|2|G|586
7R4X|1|2|A|587
7R4X|1|2|G|588
7R4X|1|2|G|589
7R4X|1|2|A2M|590
7R4X|1|2|U|591
7R4X|1|2|C|592

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain e

40S ribosomal protein S30