IL_7R4X_051

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

AGG(PSU)(PSU)C*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R4X_051 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.3718

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

7R4X|1|2|A|1042
7R4X|1|2|G|1043
7R4X|1|2|G|1044
7R4X|1|2|PSU|1045
7R4X|1|2|PSU|1046
7R4X|1|2|C|1047
*
7R4X|1|2|G|1071
7R4X|1|2|U|1072
7R4X|1|2|U|1073

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain O

40S ribosomal protein S14

Chain a

40S ribosomal protein S26