IL_7R4X_087

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

7R4X|1|2|A|1825

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R4X_087 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.3505

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

7R4X|1|2|C|1708
7R4X|1|2|G|1709
7R4X|1|2|C|1710
7R4X|1|2|U|1711
*
7R4X|1|2|A|1822
7R4X|1|2|A|1823
7R4X|1|2|A|1824
7R4X|1|2|A|1825
7R4X|1|2|G|1826

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23

Chain n

60S ribosomal protein L41