IL_7R4X_108

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GGA*U(PSU)

Length

5 nucleotides

Bulged bases

7R4X|1|2|G|1207

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R4X_108 not in the Motif Atlas

Homologous match to IL_8C3A_448

Geometric discrepancy: 0.3352

The information below is about IL_8C3A_448

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.11

Basepair signature

cWW-L-cWW

Number of instances in this motif group

46

Unit IDs

7R4X|1|2|G|1206
7R4X|1|2|G|1207
7R4X|1|2|A|1208
*
7R4X|1|2|U|1691
7R4X|1|2|PSU|1692

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain a

40S ribosomal protein S26