IL_7R4X_119

3D structure

PDB id

7R4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of the human 40S ribosomal subunit - Full map

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

ACAGGA*UU

Length

8 nucleotides

Bulged bases

7R4X|1|2|G|1285

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R4X_119 not in the Motif Atlas

Geometric match to IL_4V9F_009

Geometric discrepancy: 0.361

The information below is about IL_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

7R4X|1|2|A|1282
7R4X|1|2|C|1283
7R4X|1|2|A|1284
7R4X|1|2|G|1285
7R4X|1|2|G|1286
7R4X|1|2|A|1287
*
7R4X|1|2|U|1314
7R4X|1|2|U|1315

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain K

40S ribosomal protein S10

Chain M

40S ribosomal protein S12

Chain f

Ubiquitin-40S ribosomal protein S27a