IL_7R7A_008

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AAC*GU

Length

5 nucleotides

Bulged bases

7R7A|1|1|A|165

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R7A_008 not in the Motif Atlas

Geometric match to IL_7A0S_016

Geometric discrepancy: 0.2733

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

7R7A|1|1|A|164
7R7A|1|1|A|165
7R7A|1|1|C|166
*
7R7A|1|1|G|256
7R7A|1|1|U|257

Current chains

Chain 1

25S rRNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain h

60S ribosomal protein L35-A

Chain v

Nucleolar protein 16