IL_7R7A_040

3D structure

PDB id

7R7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

State E1 nucleolar 60S ribosome biogenesis intermediate - Composite model

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

7R7A|1|1|G|1236

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7R7A_040 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.4455

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

7R7A|1|1|G|1234
7R7A|1|1|U|1235
7R7A|1|1|G|1236
7R7A|1|1|G|1237
7R7A|1|1|C|1238
*
7R7A|1|1|G|1250
7R7A|1|1|A|1251
7R7A|1|1|A|1252
7R7A|1|1|U|1253
7R7A|1|1|C|1254

Current chains

Chain 1

25S rRNA

Nearby chains

Chain W

Ribosome assembly factor MRT4

Chain r

Ribosome biogenesis protein NSA2