IL_7R9F_001

3D structure

PDB id

7R9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type yeast Pseudouridine Synthase, PUS1, bound to 5-Fluorouracil RNA

Experimental method

X-RAY DIFFRACTION

Resolution

2.89 Å

Loop

Sequence

CGGG*CGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25872.4

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

5

Unit IDs

7R9F|1|B|C|5
7R9F|1|B|G|6
7R9F|1|B|G|7
7R9F|1|B|G|8
*
7R9F|1|B|C|5||||8_555
7R9F|1|B|G|6||||8_555
7R9F|1|B|G|7||||8_555
7R9F|1|B|G|8||||8_555

Current chains

Chain B

RNA (5'-R(*UP*AP*AP*UP*CP*GP*GP*GP*AP*UP*UP*CP*CP*GP*GP*AP*UP*A)-3')

Nearby chains

Chain A

tRNA pseudouridine synthase 1