IL_7RQ9_228

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

AGAAG*UGGU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ9_228 not in the Motif Atlas

Homologous match to IL_7RQB_060

Geometric discrepancy: 0.0989

The information below is about IL_7RQB_060

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_07235.1

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7RQ9|1|2A|A|1469
7RQ9|1|2A|G|1470
7RQ9|1|2A|A|1471
7RQ9|1|2A|A|1472
7RQ9|1|2A|G|1473
*
7RQ9|1|2A|U|1518
7RQ9|1|2A|G|1519
7RQ9|1|2A|G|1520
7RQ9|1|2A|U|1523

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains