IL_7RQ9_298

3D structure

PDB id

7RQ9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the A2058-dimethylated Thermus thermophilus 70S ribosome in complex with iboxamycin, mRNA, deacylated A- and E-site tRNAs, and aminoacylated P-site tRNA at 2.60A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQ9_298 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1283

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7RQ9|1|2a|G|409
7RQ9|1|2a|G|410
7RQ9|1|2a|A|411
7RQ9|1|2a|A|412
7RQ9|1|2a|G|413
7RQ9|1|2a|A|414
7RQ9|1|2a|A|415
7RQ9|1|2a|G|416
*
7RQ9|1|2a|U|427
7RQ9|1|2a|G|428
7RQ9|1|2a|U|429
7RQ9|1|2a|A|430
7RQ9|1|2a|A|431
7RQ9|1|2a|A|432
7RQ9|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4