IL_7RQA_042

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GUUGG*CCAUC

Length

10 nucleotides

Bulged bases

7RQA|1|1A|U|1061, 7RQA|1|1A|C|1076

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQA_042 not in the Motif Atlas

Homologous match to IL_7RQB_043

Geometric discrepancy: 0.257

The information below is about IL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQA|1|1A|G|1059
7RQA|1|1A|U|1060
7RQA|1|1A|U|1061
7RQA|1|1A|G|1062
7RQA|1|1A|G|1063
*
7RQA|1|1A|C|1075
7RQA|1|1A|C|1076
7RQA|1|1A|A|1077
7RQA|1|1A|U|1078
7RQA|1|1A|C|1079

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25