IL_7RQA_328

3D structure

PDB id

7RQA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MTI-tripeptidyl-tRNA analog ACCA-ITM at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

7RQA|1|2a|C|1054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQA_328 not in the Motif Atlas

Geometric match to IL_4LFB_044

Geometric discrepancy: 0.1361

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.2

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

7RQA|1|2a|U|1052
7RQA|1|2a|G|1053
7RQA|1|2a|C|1054
7RQA|1|2a|A|1055
7RQA|1|2a|U|1056
*
7RQA|1|2a|A|1204
7RQA|1|2a|U|1205
7RQA|1|2a|G|1206

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2j

30S ribosomal protein S10

Chain 2n

30S ribosomal protein S14 type Z

Chain 2y

Ribosome-associated inhibitor A