IL_7RQB_079

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

7RQB|1|1A|C|2055, 7RQB|1|1A|C|2612, 7RQB|1|1A|U|2613, 7RQB|1|1A|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

7RQB|1|1A|A|2054
7RQB|1|1A|C|2055
7RQB|1|1A|G|2056
7RQB|1|1A|A|2057
*
7RQB|1|1A|U|2611
7RQB|1|1A|C|2612
7RQB|1|1A|U|2613
7RQB|1|1A|A|2614
7RQB|1|1A|U|2615

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 15

50S ribosomal protein L32

Chain 1E

50S ribosomal protein L3

Chain 1W

50S ribosomal protein L22