IL_7RQB_086

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQB_086 not in the Motif Atlas

Homologous match to IL_8VTW_085

Geometric discrepancy: 0.0984

The information below is about IL_8VTW_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQB|1|1A|G|2124
7RQB|1|1A|G|2125
7RQB|1|1A|A|2126
7RQB|1|1A|G|2127
*
7RQB|1|1A|C|2161
7RQB|1|1A|G|2162
7RQB|1|1A|C|2163
7RQB|1|1A|C|2164
7RQB|1|1A|G|2165
7RQB|1|1A|G|2166
7RQB|1|1A|U|2167
7RQB|1|1A|G|2168
7RQB|1|1A|A|2169
7RQB|1|1A|A|2170
7RQB|1|1A|A|2171
7RQB|1|1A|U|2172
7RQB|1|1A|A|2173
7RQB|1|1A|C|2174

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains