IL_7RQB_087

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

7RQB|1|1A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQB_087 not in the Motif Atlas

Homologous match to IL_8VTW_086

Geometric discrepancy: 0.1013

The information below is about IL_8VTW_086

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQB|1|1A|C|2129
7RQB|1|1A|U|2130
7RQB|1|1A|G|2131
7RQB|1|1A|U|2132
7RQB|1|1A|G|2133
7RQB|1|1A|A|2134
7RQB|1|1A|A|2135
7RQB|1|1A|C|2136
*
7RQB|1|1A|G|2155
7RQB|1|1A|G|2156
7RQB|1|1A|G|2157
7RQB|1|1A|A|2158
7RQB|1|1A|G|2159

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains