IL_7RQB_102

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

7RQB|1|1A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

7RQB|1|1A|U|2636
7RQB|1|1A|U|2637
7RQB|1|1A|G|2638
7RQB|1|1A|A|2639
7RQB|1|1A|G|2640
*
7RQB|1|1A|C|2774
7RQB|1|1A|A|2775
7RQB|1|1A|A|2776
7RQB|1|1A|G|2777
7RQB|1|1A|A|2778
7RQB|1|1A|U|2779
7RQB|1|1A|G|2780
7RQB|1|1A|A|2781
7RQB|1|1A|G|2782

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1N

50S ribosomal protein L13