IL_7RQB_305

3D structure

PDB id

7RQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MAI-tripeptidyl-tRNA analog ACCA-IAM at 2.45A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.45 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQB_305 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.107

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7RQB|1|2a|G|409
7RQB|1|2a|G|410
7RQB|1|2a|A|411
7RQB|1|2a|A|412
7RQB|1|2a|G|413
7RQB|1|2a|A|414
7RQB|1|2a|A|415
7RQB|1|2a|G|416
*
7RQB|1|2a|U|427
7RQB|1|2a|G|428
7RQB|1|2a|U|429
7RQB|1|2a|A|430
7RQB|1|2a|A|431
7RQB|1|2a|A|432
7RQB|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4