IL_7RQC_055

3D structure

PDB id

7RQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site aminoacyl-tRNA analog ACC-PMN, and P-site MFI-tripeptidyl-tRNA analog ACCA-IFM at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CGAUG*CUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQC_055 not in the Motif Atlas

Geometric match to IL_4WF9_051

Geometric discrepancy: 0.3465

The information below is about IL_4WF9_051

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7RQC|1|1A|C|1417
7RQC|1|1A|G|1418
7RQC|1|1A|A|1419
7RQC|1|1A|U|1420
7RQC|1|1A|G|1421
*
7RQC|1|1A|C|1577
7RQC|1|1A|U|1578
7RQC|1|1A|A|1579
7RQC|1|1A|A|1580
7RQC|1|1A|G|1581

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains