IL_7RQD_043

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GUUGG*CCAUC

Length

10 nucleotides

Bulged bases

7RQD|1|1A|U|1061, 7RQD|1|1A|C|1076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQD_043 not in the Motif Atlas

Homologous match to IL_7RQB_043

Geometric discrepancy: 0.2268

The information below is about IL_7RQB_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQD|1|1A|G|1059
7RQD|1|1A|U|1060
7RQD|1|1A|U|1061
7RQD|1|1A|G|1062
7RQD|1|1A|G|1063
*
7RQD|1|1A|C|1075
7RQD|1|1A|C|1076
7RQD|1|1A|A|1077
7RQD|1|1A|U|1078
7RQD|1|1A|C|1079

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16