IL_7RQD_133
3D structure
- PDB id
- 7RQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GGACG*CGGUAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7RQD_133 not in the Motif Atlas
- Homologous match to IL_4LFB_018
- Geometric discrepancy: 0.1101
- The information below is about IL_4LFB_018
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_82100.1
- Basepair signature
- cWW-tWW-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 3
Unit IDs
7RQD|1|1a|G|446
7RQD|1|1a|G|447
7RQD|1|1a|A|448
7RQD|1|1a|C|449
7RQD|1|1a|G|450
*
7RQD|1|1a|C|483
7RQD|1|1a|G|484
7RQD|1|1a|G|485
7RQD|1|1a|U|486
7RQD|1|1a|A|487
7RQD|1|1a|C|488
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1p
- 30S ribosomal protein S16
Coloring options: