IL_7RQD_134
3D structure
- PDB id
- 7RQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.5 Å
Loop
- Sequence
- GAAACCC*GGACUGAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7RQD_134 not in the Motif Atlas
- Geometric match to IL_6CZR_131
- Geometric discrepancy: 0.1841
- The information below is about IL_6CZR_131
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30149.1
- Basepair signature
- cWW-L-R-L-R-tWH-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7RQD|1|1a|G|450
7RQD|1|1a|A|451
7RQD|1|1a|A|452
7RQD|1|1a|A|453
7RQD|1|1a|C|454
7RQD|1|1a|C|455
7RQD|1|1a|C|456
*
7RQD|1|1a|G|475
7RQD|1|1a|G|476
7RQD|1|1a|A|477
7RQD|1|1a|C|479
7RQD|1|1a|U|480
7RQD|1|1a|G|481
7RQD|1|1a|A|482
7RQD|1|1a|C|483
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1p
- 30S ribosomal protein S16
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