IL_7RQD_279

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

7RQD|1|2A|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQD_279 not in the Motif Atlas

Homologous match to IL_7RQB_107

Geometric discrepancy: 0.0661

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7RQD|1|2A|G|2737
7RQD|1|2A|A|2738
7RQD|1|2A|U|2739
7RQD|1|2A|A|2740
7RQD|1|2A|A|2741
7RQD|1|2A|C|2742
*
7RQD|1|2A|G|2762
7RQD|1|2A|G|2763
7RQD|1|2A|A|2764
7RQD|1|2A|A|2765
7RQD|1|2A|G|2766
7RQD|1|2A|C|2767

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 29

50S ribosomal protein L36

Chain 2H

50S ribosomal protein L6

Chain 2N

50S ribosomal protein L13