IL_7RQD_360

3D structure

PDB id

7RQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MTI-tripeptidyl-tRNA analog ACCA-ITM, and chloramphenicol at 2.50A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CCUGUGAACCC*GGGGGAGG

Length

19 nucleotides

Bulged bases

7RQD|1|2A|G|2131, 7RQD|1|2A|U|2132

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7RQD|1|2A|C|2128
7RQD|1|2A|C|2129
7RQD|1|2A|U|2130
7RQD|1|2A|G|2131
7RQD|1|2A|U|2132
7RQD|1|2A|G|2133
7RQD|1|2A|A|2134
7RQD|1|2A|A|2135
7RQD|1|2A|C|2136
7RQD|1|2A|C|2137
7RQD|1|2A|C|2138
*
7RQD|1|2A|G|2153
7RQD|1|2A|G|2154
7RQD|1|2A|G|2155
7RQD|1|2A|G|2156
7RQD|1|2A|G|2157
7RQD|1|2A|A|2158
7RQD|1|2A|G|2159
7RQD|1|2A|G|2160

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains