IL_7RQE_304

3D structure

PDB id

7RQE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, A-site deacylated tRNA analog CACCA, P-site MAI-tripeptidyl-tRNA analog ACCA-IAM, and chloramphenicol at 2.40A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7RQE_304 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1202

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7RQE|1|2a|G|409
7RQE|1|2a|G|410
7RQE|1|2a|A|411
7RQE|1|2a|A|412
7RQE|1|2a|G|413
7RQE|1|2a|A|414
7RQE|1|2a|A|415
7RQE|1|2a|G|416
*
7RQE|1|2a|U|427
7RQE|1|2a|G|428
7RQE|1|2a|U|429
7RQE|1|2a|A|430
7RQE|1|2a|A|431
7RQE|1|2a|A|432
7RQE|1|2a|C|433

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2d

30S ribosomal protein S4